ftract_dev / ImaGIN2 · Commits

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Authored by Anthony Boyer
Commit e90ad1737705c9c04c2c5f7a739cf063a859486b 1 parent 98cdfa1a

ImaGIN_Electrode: when duplicated channels, pick the one using uppercase as iEEG… 

…. ImaGIN_SpikesDetection: Now ignore channels with special characters.
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Showing 2 changed files with 17 additions and 1 deletions
... ... @@ -143,8 +143,22 @@ for i0 = 1:size(t,1)
% If the new channel has strictly the same case, or if it corresponds to a replaced "prime": remove the previous match
if isequal(Sensors.label{i1}, Name{iChanPos}) || ...
(any(Sensors.label{i1} == '''') && strcmp(strrep(upper(Sensors.label{i1}), '''', 'p'), Name{iChanPos}))
disp(['ImaGIN> WARNING: Channel name conflict: ' Sensors.label{i1} ' matched with ' Name{iChanPos} ', ' chMatchLog{iPrevious,1} 'discarded.']);
disp(['ImaGIN> WARNING: Channel name conflict: ' Sensors.label{i1} ' matched with ' Name{iChanPos} ', ' chMatchLog{iPrevious,1} ' discarded.']);
chMatchLog(iPrevious,:) = [];
% If both labels are the same regardless of the case, pick the one with uppercase (intra-recording).
elseif strcmpi(chMatchLog{iPrevious,1},Sensors.label{i1})
uppercase_label = find([sum(isstrprop(chMatchLog{iPrevious,1},'upper'))>0 sum(isstrprop(Sensors.label{i1},'upper'))>0]);
if numel(uppercase_label) == 1
disp(['ImaGIN> WARNING: Channel name conflict: ' Sensors.label{i1} ' matched with ' Name{iChanPos} ', ' chMatchLog{iPrevious,1} ' discarded.']);
% Rename the scalp electrode and remove the coordinates
scalp_idx = find(strcmp(SpmMat.D.sensors.eeg.label,chMatchLog{iPrevious,1}));
Sensors.elecpos(scalp_idx,:) = nan(1,3);
Sensors.chanpos(scalp_idx,:) = nan(1,3);
Sensors.label{scalp_idx} = ['SCALP' Sensors.label{scalp_idx}];
chMatchLog(iPrevious,:) = [];
else
error(['Duplicated label found: ' Sensors.label{i1}]);
end
else
disp(['ImaGIN> WARNING: Channel name conflict: ' chMatchLog{iPrevious,1} ' matched with ' Name{iChanPos} ', ' Sensors.label{i1} ' discarded.']);
iChanPos = [];
... ...
... ... @@ -50,10 +50,12 @@ function ImaGIN_SpikesDetection(S)
eeg_chans_idxes = indchantype(D,'EEG');
for cc=1:numel(eeg_chans_idxes)
channel_name = chanlabels(D,eeg_chans_idxes(cc));
if isvarname(channel_name{:})
channels.(channel_name{:}).timeserie{ff,:} = file_baselines(eeg_chans_idxes(cc),:,:);
channels.(channel_name{:}).zeroed{ff,:} = file_zeroed(eeg_chans_idxes(cc),:,:);
channels.(channel_name{:}).coordinates{ff,:} = sensors_info.elecpos(find(strcmp(channel_name,sensors_info.label)),:);
end
end
% Tidy the channels struct with empty inputs for consistency
temp_montage = fieldnames(channels);
for nn=1:numel(temp_montage)
... ...